Insertion junction: CLIP2.069738_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.069738
Chromosome:chromosome 3
Location:2633285
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre03.g160500 TSK1 (1 of 1) PTHR22594//PTHR22594:SF35 - ASPARTYL/LYSYL-TRNA SYNTHETASE // LYSINE--TRNA LIGASE; Lysyl-tRNA synthetase 3'UTR
Cre03.g160550 MTP4 Metal Transport Protein 4; (1 of 3) PTHR11562:SF21 - PROTEIN R02F11.3, ISOFORM B CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACCATCTTCGTCTCGTGTGGTCGACCCATTCGCGCGCAAGGTTCGCATC
Internal bar code:TGCTTCCTTGGTGAAATTATCT

Confirmation - LEAP-Seq

LEAP-Seq distance:588
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:ATGACCAGTGACGTGGACAC
Suggested primer 2:CAGGAGGGAACTGGAGCTTG