Insertion junction: CLIP2.069782_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.069782
Chromosome:chromosome 6
Location:7051162
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g297516 (1 of 274) IPR020683 - Ankyrin repeat-containing domain 5'UTR
Cre06.g297550 (1 of 1) K14649 - transcription initiation factor TFIID subunit 8 (TAF8) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTGTGACACAGTAACACAGAGTTTGTGTATTGCGCAAGGCGCTGAAAG
Internal bar code:ATATGTAGTCACCTCTTGTAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2578
LEAP-Seq percent confirming:79.1667
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGGTCCAGCAGGCCTATG
Suggested primer 2:CTGACACCCCTGTTCTCACC