Insertion junction: CLIP2.069794_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.069794
Chromosome:chromosome 9
Location:913340
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403150 PWR9 (1 of 14) PF04720 - PDDEXK-like family of unknown function (PDDEXK_6); PWR motif protein 5'UTR
Cre09.g403200 FAP198 Flagellar Associated Protein 198; (1 of 1) PTHR21281//PTHR21281:SF0 - UNCHARACTERIZED // CYTOCHROME B5 DOMAIN-CONTAINING PROTEIN 1 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATTCAGAGCTGATAGAGAGCCATATCACTTGATTTTGCTGTCGCGGCGA
Internal bar code:GCACCCAGTCGGTTCCTCACGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1768
LEAP-Seq percent confirming:95.8333
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGTATCTCCGCAGTGGCC
Suggested primer 2:AACAACTGCGGGTCCTGTAG