Insertion junction: CLIP2.069882_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.069882
Chromosome:plastome
Location:8510
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802265 ChreCp003,2716966,chlB (1 of 1) K04039 - light-independent protochlorophyllide reductase subunit B (chlB); light-independent protochlorophyllide reductase subunit B CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATACCTGAAGGCGGAAATGTACACAACTTAAAAAAATTACCCCAAGCTT
Internal bar code:AGTATTTGAGCACCGTAGGCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:803
LEAP-Seq percent confirming:77.7778
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAAAACCAGGCTGCTTGG
Suggested primer 2:TAGCCCGTCTAGCAAGTTGC