Insertion junction: CLIP2.069956_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.069956
Chromosome:plastome
Location:122893
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802313 rbcL,ChreCp049,2717040 (1 of 1) K01601 - ribulose-bisphosphate carboxylase large chain (rbcL); RuBisCO large subunit CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTAACGGTCAAGACTTGTTAAACCGTCAGTCCATACTGTAGTCCATGTA
Internal bar code:TGGTTGCTCCTCGCACGACCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:137
LEAP-Seq percent confirming:8.62069
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:53
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCTTATCCCCTGACAGGA
Suggested primer 2:GCCAACGCATGAATGGTTGT