Insertion junction: CLIP2.069961_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.069961
Chromosome:chromosome 3
Location:3734063
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g169150 (1 of 1) K13161 - heterogeneous nuclear ribonucleoprotein R (HNRNPR) 5'UTR_intron
lncRNA_TCONS_00068980 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGGAATCGACTGGGATAGCCAACGGACCTGCTATAAACGGCTTGCGAGT
Internal bar code:CATAAGGGTTTTCAACAAACCG

Confirmation - LEAP-Seq

LEAP-Seq distance:5899
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:78
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:78

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTAGTTGGTGCTGTCGGT
Suggested primer 2:GAGCGGACTCCAAAGGAACA