Insertion junction: CLIP2.070011_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.070011
Chromosome:chromosome 13
Location:1191921
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g569850 AMT4,AMT1D Ammonium transporter; (1 of 8) K03320 - ammonium transporter, Amt family (amt, AMT, MEP) 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTTGGCCGCTGCATGCGCGCCGAGCGTCTGCTCAGTTGATAGATGTCAT
Internal bar code:GTTCGCCCAGTTATCGCGTCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2488
LEAP-Seq percent confirming:97.1429
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:TCAGCGACTCAAGCGAAACT
Suggested primer 2:ACTGGAACGAGCCGCAATTA