Insertion junction: CLIP2.070026_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.070026
Chromosome:plastome
Location:175141
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802329 ChreCp064,psbD,2716961 (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD); photosystem II protein D2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCACCGTGTAAAGCAACGAATGCCCATAAACCACCAAGTTGACACCAA
Internal bar code:GTTCGCTGTTACTGGAATGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:87
LEAP-Seq percent confirming:16.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TAGGGGATAGGCCAGGCAAT
Suggested primer 2:ACGGAATGTGTTAGCACCGT