Insertion junction: CLIP2.070112_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.070112
Chromosome:chromosome 17
Location:1445715
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g706450 LIC3 (1 of 1) IPR000104//IPR006029//IPR006201//IPR006202 - Antifreeze protein, type I // Neurotransmitter-gated ion-channel transmembrane domain // Neurotransmitter-gated ion-channel // Neurotransmitter-gated ion-channel ligand-binding domain; Ligand-gated ion channel 5'UTR
Cre17.g706500 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGATTTGTGCACACATACAACCGATAGGGTTCACTGACAAGGTGGCCC
Internal bar code:TCGTAGTGCAAAGTCTTCTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:869
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CTATCTGGCTGCCTGTCTCG
Suggested primer 2:GTTCTCGTGAATGGCGATGC