Insertion junction: CLIP2.070299_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.070299
Chromosome:chromosome 9
Location:2608226
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g392250 OTU5 (1 of 2) IPR000104//IPR003323 - Antifreeze protein, type I // OTU domain; OTU-like cysteine protease 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGAAGCTCTCAGTCAGCATGGGCTGGTTGGGAGTCTCAAAGAGCGCCAT
Internal bar code:TTCGGGAAGGCGGCAAGCGCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:911
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TCGAGGTGTGTCAGAAGCAC
Suggested primer 2:ACAGGGTGCACTGAAGACTG