Insertion junction: CLIP2.070333_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.070333
Chromosome:chromosome 1
Location:7610069
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g800140 (1 of 1) K12800 - NACHT, LRR and PYD domains-containing protein 3 (NLRP3, PYPAF1) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCCAGTCGGCCCCAGTTTAGCGACTACCCGCATTCCGCTGCGCACAAA
Internal bar code:CTTCTGAGCTATTATAGATGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:471
LEAP-Seq percent confirming:44.8276
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGGGTTTTGAGGAGCGAG
Suggested primer 2:CTGTAGCCCACGCACCTTAA