Insertion junction: CLIP2.070338_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.070338
Chromosome:plastome
Location:124223
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802314 2717041,ChreCp050,atpA (1 of 1) K02111 - F-type H+-transporting ATPase subunit alpha (ATPF1A, atpA); ATP synthase CF1 alpha chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTAATAATACCGCACCTACGTTGTTTGCTTCTAAGTTAAGTGCAATACCT
Internal bar code:GATCGATCAGGATGCCCTGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:680
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTGTCAGGGGATAAGCGA
Suggested primer 2:GAGCTGCAGAACCTACACGT