Insertion junction: CLIP2.070459_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.070459
Chromosome:plastome
Location:28832
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802278 2717059,rpl5,ChreCp016 50S ribosomal protein L5; (1 of 2) PF00673 - ribosomal L5P family C-terminus (Ribosomal_L5_C) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGCTATACAATACAATATAGCAATTTATTTAGCGAGGATACAGTAAATA
Internal bar code:GCATGCGTTACCGAAGACACCT

Confirmation - LEAP-Seq

LEAP-Seq distance:770
LEAP-Seq percent confirming:33.871
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:41
LEAP-Seq n unique pos:62

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTTCGGGCAAGTAAACT
Suggested primer 2:GCCACTGACGTCCACTACAA