Insertion junction: CLIP2.070460_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.070460
Chromosome:chromosome 9
Location:5602397
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g409750 CAX2 (1 of 3) K07300 - Ca2+:H+ antiporter (chaA, CAX); CAX family cation antiporter, membrane protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGCTGTGGTAGCCGAGTCCGGCTCGGCTGCTGCTTTGTGCGAGCAGAT
Internal bar code:AAGTTGGTCTTTCGCATCTGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1242
LEAP-Seq percent confirming:93.9394
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:GAACACTGCAGCAGGAGAGT
Suggested primer 2:TACGTGCTCATCTCCATCGC