Insertion junction: CLIP2.070468_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.070468
Chromosome:chromosome 3
Location:3761410
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g169400 GAD1,UXS1 (1 of 1) 4.1.1.35 - UDP-glucuronate decarboxylase / UDP-glucuronic acid decarboxylase; UDP-glucuronic acid decarboxylase for UDP-Xylose synthesis 3'UTR
Cre03.g169450 (1 of 7) IPR000048//IPR027417 - IQ motif, EF-hand binding site // P-loop containing nucleoside triphosphate hydrolase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGACACAAAGGGTCACATGATGAGCTCACGGAGTGACTTGGACAGGAA
Internal bar code:TGCGAAGTCCCGTCCAAAAGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1611
LEAP-Seq percent confirming:95.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GCATTGATCGGACTTGCGAC
Suggested primer 2:TCACCAAGGTCAAGACGACG