Insertion junction: CLIP2.070508_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.070508
Chromosome:chromosome 5
Location:2257381
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g238000 (1 of 3) IPR006502//IPR011705 - Protein of unknown function PDDEXK-like // BTB/Kelch-associated 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATGCCTCTGCGTCACCTCATTGGGCGATTTCTCTGCGACACAACGCCGC
Internal bar code:AAGTGCTGCGTGAGCGTAACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1979
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTGTGCGTAGATTGCATG
Suggested primer 2:CCTTGCATGCGCTAACGTAC