Insertion junction: CLIP2.070586_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.070586
Chromosome:plastome
Location:128283
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802317 atpH,ChreCp053,2717044 ATPase III subunit; (1 of 1) K02110 - F-type H+-transporting ATPase subunit c (ATPF0C, atpE) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCTCGTCAACCTGAAGCTGAAGGTAAAATCCGTGGTGCGCTTTTATTA
Internal bar code:TATAAAATGAACCAACCGCTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:159
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGAAGCACCAAAGGCAGT
Suggested primer 2:CCTTCCGCAGAGGGTGAAAT