Insertion junction: CLIP2.070645_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.070645
Chromosome:chromosome 3
Location:2575357
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g160000 HDA3 (1 of 3) PTHR10625//PTHR10625:SF102 - HISTONE DEACETYLASE // HISTONE DEACETYLASE 10; RPD3/HDA1 type histone deacetylase 3'UTR
Cre03.g160050 FAP184 (1 of 1) PTHR15654:SF1 - COILED-COIL DOMAIN-CONTAINING PROTEIN 96; Flagellar Associated Protein 184 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTAGATCCAATGATGAGCAAGTCACGGGCGGCCCGCATGCATGTAACGCA
Internal bar code:GTGGGTGCTAGAAGGCCACGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:3624
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:192
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:192

Suggested primers for confirmation by PCR

Suggested primer 1:GATGGGCTCAATCGAGGAGG
Suggested primer 2:CGACTCTTACGGGGATGACG