Insertion junction: CLIP2.070645_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.070645
Chromosome:chromosome 3
Location:2575359
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g160000 HDA3 (1 of 3) PTHR10625//PTHR10625:SF102 - HISTONE DEACETYLASE // HISTONE DEACETYLASE 10; RPD3/HDA1 type histone deacetylase 3'UTR
Cre03.g160050 FAP184 (1 of 1) PTHR15654:SF1 - COILED-COIL DOMAIN-CONTAINING PROTEIN 96; Flagellar Associated Protein 184 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATAGAATCACGCCAAGTGTATTGCGCCCGGAAGCAGATACACATACACG
Internal bar code:GCGGGTGCTTAACTTGTCCTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2388
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:49
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:CGACTCTTACGGGGATGACG
Suggested primer 2:GATGGGCTCAATCGAGGAGG