Insertion junction: CLIP2.070701_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.070701
Chromosome:chromosome 6
Location:8515897
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g800754 (1 of 5) K11446 - histone demethylase JARID1 [EC:1.14.11.-] (JARID1) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAACTTCTCACTCGCACCTTTCTCTCAGGCTGATAGCAAGCAAGGTTAAT
Internal bar code:CCCGGGTGGAGGTACTGACGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:5698
LEAP-Seq percent confirming:55.8511
LEAP-Seq n confirming:105
LEAP-Seq n nonconfirming:83
LEAP-Seq n unique pos:188

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGGTATTCGGGATGGAGG
Suggested primer 2:GCCCCCTGCAGTGACTAAAT