Insertion junction: CLIP2.070745_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.070745
Chromosome:chromosome 12
Location:4217880
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g518000 SCA2,SECA2 (1 of 1) PF01043//PF07517 - SecA preprotein cross-linking domain (SecA_PP_bind) // SecA DEAD-like domain (SecA_DEAD); Chloroplast-associated SecA protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACGCAAGCAGCAAAACGGTGGCCAGGCAGTGAACGCAACCACGTAAAC
Internal bar code:ATTAGTTGTTAGAATTCTAAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2311
LEAP-Seq percent confirming:5.88235
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:AGACAACGCGCTTTCAACAC
Suggested primer 2:TACGTGCCAACCGACATTCA