Insertion junction: CLIP2.070799_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.070799
Chromosome:chromosome 7
Location:1148149
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g320900 (1 of 1) PTHR20883//PTHR20883:SF5 - PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTAAAGCACTCGCAATGCAGCGCGGCAACGCGATGCGTAGTCCGTCAAA
Internal bar code:CATACTGCCATTTCAGAAATAG

Confirmation - LEAP-Seq

LEAP-Seq distance:4672
LEAP-Seq percent confirming:71.7172
LEAP-Seq n confirming:71
LEAP-Seq n nonconfirming:28
LEAP-Seq n unique pos:99

Suggested primers for confirmation by PCR

Suggested primer 1:GAACACGGCCGGTACTTACA
Suggested primer 2:TGAATTGCACAAGTCACGCG