Insertion junction: CLIP2.070816_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.070816
Chromosome:plastome
Location:187691
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802331 2716963,ChreCp066,psbC (1 of 1) K02705 - photosystem II CP43 chlorophyll apoprotein (psbC); photosystem II 43 kDa protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTGGTGTAATGGGCTTCATTGCTTGTTGTATGTCTTGGTTCAACAATAC
Internal bar code:AATCCGGCGGCACATGTACTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:264
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:TTTTCGAAACCAGCAGCAGC
Suggested primer 2:GGCCGTGACCAAGAAACAAC