Insertion junction: CLIP2.071005_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.071005
Chromosome:chromosome 13
Location:3504499
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g587550 FXL3 FixL-like PAS domain protein; (1 of 12) 2.7.13.3 - Histidine kinase / Protein kinase (histidine) 3'UTR
Cre13.g587600 (1 of 2) PTHR10907//PTHR10907:SF33 - REGUCALCIN // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCGCGAACCGATGCGCCAGGCGTCATTGGCGGATTTTAGACTGCGCTC
Internal bar code:GGGCCGTACGAGTGCAAGCTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:4404
LEAP-Seq percent confirming:93.1818
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:AGTACCATATCGCGCATGCA
Suggested primer 2:GTTTGCTTCTGTGGCTGGTG