Insertion junction: CLIP2.071083_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.071083
Chromosome:plastome
Location:91026
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802301 ycf3,ChreCp037,2717008,pafI (1 of 1) PTHR26312:SF81 - PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3; photosystem I assembly factor I CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAAAATTATCATTTCTTTGCGTTCTTGGCATTAAAAATAAAATCAGCGA
Internal bar code:CATTGCTGTTGGTCTCCTATCG

Confirmation - LEAP-Seq

LEAP-Seq distance:79
LEAP-Seq percent confirming:42.8571
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTCATTGCCGTCCTTTGG
Suggested primer 2:ACTGAGGGGCTGCAATTTGT