Insertion junction: CLIP2.071213_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.071213
Chromosome:plastome
Location:123138
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802313 rbcL,ChreCp049,2717040 (1 of 1) K01601 - ribulose-bisphosphate carboxylase large chain (rbcL); RuBisCO large subunit 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAAATGGTTCCACAAACAGAAACTAAAGCAGGTGCTGGATTCAAAGCCG
Internal bar code:GTGACATCCAATGGGGTGAGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2848
LEAP-Seq percent confirming:86.0465
LEAP-Seq n confirming:74
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:GCCAACGCATGAATGGTTGT
Suggested primer 2:TTCTGGAGTACGCATTGCCA