Insertion junction: CLIP2.071280_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.071280
Chromosome:chromosome 15
Location:1277527
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g801727 NCL66 Nuclear Control of chloroplast-Like 66; (1 of 39) PF08373 - RAP domain (RAP) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGAAGCAAGTCATCACGCCGACTTAATTTCATCGCCTGCTGCTCCTCTG
Internal bar code:TTTATTGTATCAGCCGACATTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1676
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCTAGGGTGATGGGTGAT
Suggested primer 2:ACGCTGATTATAGGCCCGTG