Insertion junction: CLIP2.071353_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.071353
Chromosome:plastome
Location:170475
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802326 psaJ,2716958,ChreCp061 photosystem I subunit IX; (1 of 1) K02697 - photosystem I subunit IX (psaJ) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAGAATTAAGAATTACTTTATGAAAGATTTTACTACTTATTTATCAACA
Internal bar code:TGTTTAGTTGGTGAGGGGGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:162
LEAP-Seq percent confirming:26.3158
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCAGCTGTTTTTGACCCC
Suggested primer 2:TTTGCAACTTTAGCGGGTGC