Insertion junction: CLIP2.071392_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.071392
Chromosome:chromosome 9
Location:1098005
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401750 (1 of 3) PTHR10696 - GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED; Similar to conserved hypothetical protein in bacteria 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGACCTCTAGGCGGTCGCCCAGCCGCAGGCGCATGCAGTACAGAAGGT
Internal bar code:TACAAGACTTGCAACAAAACTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1266
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:CGTAATGAATGCTGTGGGCG
Suggested primer 2:CACCGCAACCACGAATTTGT