Insertion junction: CLIP2.071404_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.071404
Chromosome:chromosome 13
Location:2211752
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g578150 RRAA1,RRA1 Regulator of ribonuclease activity A; (1 of 1) 4.1.1.3 - Oxaloacetate decarboxylase / Oxaloacetate carboxy-lyase 3'UTR
Cre13.g578200 (1 of 274) IPR020683 - Ankyrin repeat-containing domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTTGGCGAGTGGCCAGCGAACCGCTAAGAAAATGGAGGCTGGAGACTGT
Internal bar code:TGATAGGGGGCCGGGGTATGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2812
LEAP-Seq percent confirming:60.7143
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CACGCGACATAGCAATGGTG
Suggested primer 2:GCATGAGGAGAGACGACTCG