Insertion junction: CLIP2.071530_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.071530
Chromosome:chromosome 10
Location:3795677
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g445650 SMC3 (1 of 1) K06669 - structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) (SMC3, CSPG6); Structural Maintenance of Chromosomes protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGCGACTCTCCATACTGTTTGGGAATCATCAAGTTTACTGTCTTAGGC
Internal bar code:ACAGAATCTGGGTGTCACGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1260
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCCAAACCAAGTCGTCTA
Suggested primer 2:CCTGCCCAGCTAGCTATTCC