Insertion junction: CLIP2.071694_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.071694
Chromosome:plastome
Location:51015
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802285 psbA,ChreCp021,2716969 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATACCATTTGCCTTATTTTCAGAATTTAGTAAGGAATTGTCTTCATCAC
Internal bar code:AGACGAATGGAGGCGGGCAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:149
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTCAGCACTCGTTCTGTT
Suggested primer 2:AACTGCCTGCTTCCTCCTTC