Insertion junction: CLIP2.071701_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.071701
Chromosome:plastome
Location:86548
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802299 rps2,ChreCp034,2717005 30S ribosomal protein S2; (1 of 1) PTHR12534:SF0 - 28S RIBOSOMAL PROTEIN S2, MITOCHONDRIAL CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGATTCTATTTATGATAAAAAATTAAGTAGACAATCTAAAAAAGTAGC
Internal bar code:TCGATGTATACGGAAGCTTGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:96
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTTCGGGCAAGTAAACT
Suggested primer 2:TCAACGTCTGGTAAGCAAGCA