Insertion junction: CLIP2.071727_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.071727
Chromosome:chromosome 8
Location:1618695
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre08.g365720 (1 of 781) IPR000104 - Antifreeze protein, type I CDS
lncRNA_TCONS_00154085 CDS
lncRNA_TCONS_00155246 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTACGTTGCGGCGGCGCCGGGGCCCTTCCTCAGGAGCCTGGTGTGGCCC
Internal bar code:GGTATCGCAAGGCATATCATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:551
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CCACACGATCACACACCAGA
Suggested primer 2:TCACATTTTTGCCCGCACAG