Insertion junction: CLIP2.071799_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.071799
Chromosome:plastome
Location:167025
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802324 tic214,orf1995,ycf1,2717035,ChreCp059 Forms with TIC20, TIC56 and TIC100 the 1-MD complex mediating chlorolast protein import CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCTTCAGCCATGATTTCAGAAGTTTCTGTTTTAGATGGTTATTTTCAT
Internal bar code:CGATGTATATGCATGTTTAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:162
LEAP-Seq percent confirming:14.2857
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTCTTGAGGCACTAAACCA
Suggested primer 2:CTCCCCTTCCCCTAACGAGA