Insertion junction: CLIP2.071912_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.071912
Chromosome:chromosome 2
Location:4657574
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g107650 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGTAATGCAGCTCGCATACGCTACGGTATCGTGCGTCGTGTCAGGTCCA
Internal bar code:TGGTTTACTTTTGGTGGGCTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:720
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTTCAGTCGGACACGTCA
Suggested primer 2:GGCAAGCAACGCTGAAGAAA