Insertion junction: CLIP2.071923_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.071923
Chromosome:plastome
Location:181530
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802330 orf2971,ftsH,ChreCp065,2716962 ATP-dependent zinc metalloprotease; (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACGTAATTTCGCTTCTATTAAAAACCAATCGTCTAACAACAGCAATTTA
Internal bar code:TCTCGTAGTCAATGGGCTGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1219
LEAP-Seq percent confirming:42.8571
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:ATCGGCCCAAATGTCCCAAA
Suggested primer 2:GCAAAGGAAACTCAGAGAGCC