Insertion junction: CLIP2.071980_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.071980
Chromosome:plastome
Location:170255
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802326 psaJ,2716958,ChreCp061 photosystem I subunit IX; (1 of 1) K02697 - photosystem I subunit IX (psaJ) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGTGAGGGTAAATAAATGTGACTGACACACTCCAGTGTGTCAGTCATAA
Internal bar code:CAATAATACTTGCGAAGTAGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:54
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGCAACTTTAGCGGGTGC
Suggested primer 2:TTGCAGCTGTTTTTGACCCC