Insertion junction: CLIP2.072044_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.072044
Chromosome:chromosome 17
Location:1638581
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g707650 SNRK2L (1 of 4) PTHR24343//PTHR24343:SF167 - SERINE/THREONINE KINASE // SUBFAMILY NOT NAMED; snRK1 family in Chlamydomonas, subgroup 2 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGAGAACTCCCGTGCTAGCAGTCGCAGATGATACTCTACGTGCGTATAA
Internal bar code:GGCGGTCTGCAAGATGGGCCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:3389
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:70
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:70

Suggested primers for confirmation by PCR

Suggested primer 1:GTCGTAGGCAACCAAGGACA
Suggested primer 2:GTCCCCACTTGAAGGGTCAG