Insertion junction: CLIP2.072090_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.072090
Chromosome:plastome
Location:63180
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802290 ChreCp026,2716975,psbM photosystem II protein M; (1 of 1) K02714 - photosystem II PsbM protein (psbM) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGGTACTAGAAAGAGATTTGGATTAGTTAAATTAGTCTTGAGTAGAAG
Internal bar code:TCCGGTCCTGGCTCTTTTAAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:186
LEAP-Seq percent confirming:45.4545
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:AGCAGATAAGAGCTTCGTTGC
Suggested primer 2:GTTTCCCCTTCCCCTTACGG