Insertion junction: CLIP2.072152_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.072152
Chromosome:chromosome 1
Location:3188539
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre01.g020305 SDH4 Succinate dehydrogenase subunit D; (1 of 1) IPR007992 - Succinate dehydrogenase [ubiquinone]cytochrome b small subunit, CybS intron
Cre01.g802251 (1 of 2) PF05328 - CybS, succinate dehydrogenase cytochrome B small subunit (CybS) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACAAAGCTGTGAACTGTAAAGCGACGGGTAGACACGAAGGCACGGCAAG
Internal bar code:ACCGAGGGGTCCCATTCCGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2229
LEAP-Seq percent confirming:31.5789
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TACGTCACCACTGACATGCC
Suggested primer 2:TATCATGAGGGCACGTACGC