Insertion junction: CLIP2.072162_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.072162
Chromosome:chromosome 7
Location:3090390
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre07.g800801 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGCTGCAACATTTTTTTTTTTTGAGGAATCATCCTTACAAGGTTGAACA
Internal bar code:GGGTATTGGTGACGTTATCTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:192
LEAP-Seq percent confirming:7.14286
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGCGCCCATGAGTACTAG
Suggested primer 2:ACAATAACCCGGTGGCTCTG