Insertion junction: CLIP2.072182_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.072182
Chromosome:chromosome 12
Location:6842106
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre12.g801457 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGTGCATGGAGCGCGCAGCAAAGTGGTCCATCAGGTCGGTGAGCTCCTT
Internal bar code:CTATAACAACCGAGATAGAAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:449
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:AGCCACTGACGTCCTTTCTG
Suggested primer 2:CCTGGTGATGCTGCATCGTA