Insertion junction: CLIP2.072232_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.072232
Chromosome:chromosome 7
Location:5391097
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g350450 (1 of 2) PTHR22763:SF71 - PROTEIN Y105C5B.11, ISOFORM B 3'UTR
Cre07.g350451 (1 of 2) IPR001680//IPR017986//IPR020472//IPR027417 - WD40 repeat // WD40-repeat-containing domain // G-protein beta WD-40 repeat // P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCCCGCGGCTGGCACTCGACGTGCCCGGGTGGTGCGCGGCCACGCCGGG
Internal bar code:GTAAATGGACTATGGTAAGCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1522
LEAP-Seq percent confirming:67.6056
LEAP-Seq n confirming:48
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:71

Suggested primers for confirmation by PCR

Suggested primer 1:TAATCTGGTCGCTCGGATGC
Suggested primer 2:CTGCATGAGTGGATTGGGGT