Insertion junction: CLIP2.072238_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.072238
Chromosome:chromosome 3
Location:5205979
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g181650 (1 of 1) PTHR20973//PTHR20973:SF0 - NON-SMC ELEMENT 1-RELATED // NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 1 HOMOLOG 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACCAAATGGGATGTGGGGTGGGATTCTGGGAAGACTGCCAACCAGTCGA
Internal bar code:GAGGCGGGATTTGTCGTATTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:689
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GGATTGCCTGGTAGTGCAGT
Suggested primer 2:CGTTGCGTGCCCTATGATTG