Insertion junction: CLIP2.072304_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.072304
Chromosome:chromosome 5
Location:1559392
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre05.g234666 (1 of 6) 2.7.7.84 - 2'-5' oligoadenylate synthase 3'UTR
Cre05.g800535 (1 of 25) IPR001965//IPR011011//IPR013083//IPR019787 - Zinc finger, PHD-type // Zinc finger, FYVE/PHD-type // Zinc finger, RING/FYVE/PHD-type // Zinc finger, PHD-finger 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTGAGAGTCTGATCAACTCCTACGACGGGAATAGCGACATCTCCGGCC
Internal bar code:GACCAAACGTTGTGTCAAACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1235
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:AGATTTTCTCGGGCGCTTGA
Suggested primer 2:CGGTTGTCGGGTGAGGTTTA