Insertion junction: CLIP2.072336_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.072336
Chromosome:chromosome 13
Location:479537
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g565000 (1 of 139) IPR011011 - Zinc finger, FYVE/PHD-type outside_mRNA
Cre13.g565050 (1 of 11) PF07173 - Protein of unknown function (DUF1399) (DUF1399) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCCTCGGCAAGAACCTTACATTAGGGTTGTTGTCTTTTTTGCTTGTTTC
Internal bar code:GACGGTGTTGGTACTCTTCGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1445
LEAP-Seq percent confirming:64.4737
LEAP-Seq n confirming:49
LEAP-Seq n nonconfirming:27
LEAP-Seq n unique pos:76

Suggested primers for confirmation by PCR

Suggested primer 1:GTTTTGAGGTCGCGCAGTTT
Suggested primer 2:CGTAATTGCGGCCTCATGTG