Insertion junction: CLIP2.072342_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.072342
Chromosome:plastome
Location:63564
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802290 ChreCp026,2716975,psbM photosystem II protein M; (1 of 1) K02714 - photosystem II PsbM protein (psbM) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATTTTTAACCTAAAAGGTAAACCTTAAGAACGTAGTTGGATCATTGTCA
Internal bar code:TTGGATAGTTCTATTAAGGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:476
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:GTTTCCCCTTCCCCTTACGG
Suggested primer 2:TGAACAAACACGGTGCAACG