Insertion junction: CLIP2.072349_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.072349
Chromosome:chromosome 3
Location:2632986
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g160500 TSK1 (1 of 1) PTHR22594//PTHR22594:SF35 - ASPARTYL/LYSYL-TRNA SYNTHETASE // LYSINE--TRNA LIGASE; Lysyl-tRNA synthetase 3'UTR
Cre03.g160550 MTP4 Metal Transport Protein 4; (1 of 3) PTHR11562:SF21 - PROTEIN R02F11.3, ISOFORM B 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATCCAGGGTTGGTGCCAGAACGAGTGGGGCCCGGTTTCCTTCCACACCA
Internal bar code:TAGATCGAGTAACACTTTGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:1480
LEAP-Seq percent confirming:77.2727
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:ATGACCAGTGACGTGGACAC
Suggested primer 2:CAGGAGGGAACTGGAGCTTG