Insertion junction: CLIP2.072349_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.072349
Chromosome:chromosome 3
Location:2632989
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g160500 TSK1 (1 of 1) PTHR22594//PTHR22594:SF35 - ASPARTYL/LYSYL-TRNA SYNTHETASE // LYSINE--TRNA LIGASE; Lysyl-tRNA synthetase 3'UTR
Cre03.g160550 MTP4 Metal Transport Protein 4; (1 of 3) PTHR11562:SF21 - PROTEIN R02F11.3, ISOFORM B 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATATCCAAATTATTCAGTTGTACAACGACGGCAGACAGTCTCGGCACGCT
Internal bar code:TAGATCGAGTAACACTTTGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:2616
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGAGGGAACTGGAGCTTG
Suggested primer 2:ATGACCAGTGACGTGGACAC